#!/usr/bin/env bash 
#SBATCH --nodes=1 # Number of nodes 
#SBATCH --ntasks-per-node=1 # Number of tasks per node 
#SBATCH --cpus-per-task=10 # Number of OpenMP threads per task 
#SBATCH --gpus-per-node=1 # Number o
    
module purge 
module load colabfold/1.3.0 
export TMP=$JOBSCRATCH 
export TMPDIR=$JOBSCRATCH
    
## This script works if you generated the results folder with colabfold_search results results
## We do not advice to perform the alignment in the same job as the folding.
## The results of the folding will be stored in results_batch.

colabfold_batch --data=$DSDIR/ColabFold results results_batch